$O - Convert FASTA to simple GFF3
Contents
Command-Line Options
--fasta_dir Directory contain fasta files
(default: ./fasta)
--gfffilename Name of GFF3 file to be created
(default: ./out.gff)
--type SO type to assign to each feature
(default: EST)
--source Text to appear in source column
(default: .)
--attributes Additional tag=value pairs to appear in column 9
--nosequence Suppress the ##FASTA section (ie, don't
print DNA sequences)
Description
This script simply takes a collection of fasta files and converts them to simple GFF3 suitable for
loading into chado.
Name
$O - Convert FASTA to simple GFF3
Synopsys
% $O [options]
