gmx-rama - Compute Ramachandran plots

       2025, GROMACS development team

2025.0                                            Feb 10, 2025                                       GMX-RAMA(1)

gmxrama  selects  the  phi/psi  dihedral  combinations  from your topology file and computes these as a
       function of time.  Using simple Unix tools such as grep you can select out specific residues.

       gmx-rama - Compute Ramachandran plots

       Options to specify input files:

       -f[<.xtc/.trr/...>](traj.xtc)
              Trajectory: xtctrrcptgrog96pdbtng-s[<.tpr>](topol.tpr)
              Portable xdr run input file

       Options to specify output files:

       -o[<.xvg>](rama.xvg)
              xvgr/xmgr file

       Other options:

       -b<time>(0)
              Time of first frame to read from trajectory (default unit ps)

       -e<time>(0)
              Time of last frame to read from trajectory (default unit ps)

       -dt<time>(0)
              Only use frame when t MOD dt = first time (default unit ps)

       -[no]w(no)
              View output .xvg, .xpm, .eps and .pdb files

       -xvg<enum>(xmgrace)
              xvg plot formatting: xmgrace, xmgr, none

gmx(1)

       More information about GROMACS is available at <http://www.gromacs.org/>.

          gmx rama [-f[<.xtc/.trr/...>]] [-s[<.tpr>]] [-o[<.xvg>]] [-b<time>]
                   [-e<time>] [-dt<time>] [-[no]w] [-xvg<enum>]