gmx-sigeps - Convert c6/12 or c6/cn combinations to and from sigma/epsilon
Contents
Copyright
2025, GROMACS development team
2025.0 Feb 10, 2025 GMX-SIGEPS(1)
Description
gmxsigeps is a simple utility that converts C6/C12 or C6/Cn combinations to sigma and epsilon, or vice
versa. It can also plot the potential in file. In addition, it makes an approximation of a Buckingham
potential to a Lennard-Jones potential.
Name
gmx-sigeps - Convert c6/12 or c6/cn combinations to and from sigma/epsilon
Options
Options to specify output files:
-o[<.xvg>](potje.xvg)
xvgr/xmgr file
Other options:
-[no]w(no)
View output .xvg, .xpm, .eps and .pdb files
-xvg<enum>(xmgrace)
xvg plot formatting: xmgrace, xmgr, none
-c6<real>(0.001)
C6
-cn<real>(1e-06)
Constant for repulsion
-pow<int>(12)
Power of the repulsion term
-sig<real>(0.3)
sigma
-eps<real>(1)
epsilon
-A<real>(100000)
Buckingham A
-B<real>(32)
Buckingham B
-C<real>(0.001)
Buckingham C
-qi<real>(0)
qi
-qj<real>(0)
qj
-sigfac<real>(0.7)
Factor in front of sigma for starting the plot
See Also
gmx(1) More information about GROMACS is available at <http://www.gromacs.org/>.
Synopsis
gmx sigeps [-o[<.xvg>]] [-[no]w] [-xvg<enum>] [-c6<real>]
[-cn<real>] [-pow<int>] [-sig<real>] [-eps<real>]
[-A<real>] [-B<real>] [-C<real>] [-qi<real>]
[-qj<real>] [-sigfac<real>]
