logo
Free, unlimited AI code reviews that run on commit
git-lrc git-lrc GitHub Install Now We'd appreciate a star git-lrc - Free, unlimited AI code reviews that run on commit | Product Hunt git-lrc - Free, unlimited AI code reviews that run on commit | Product Hunt

gsort - sort genomic data

Author

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.

gsort 0.1.4                                       November 2020                                         GSORT(1)

Description

Positionalarguments:
       PATH   a tab-delimited file to sort

       GENOME a genome file of chromosome sizes and order

Name

       gsort - sort genomic data

Options

--chromosomemappings CHROMOSOMEMAPPINGS, -c CHROMOSOMEMAPPINGS
              a file used to re-map chromosome names for example from hg19 to GRCh37

       --memory MEMORY, -m MEMORY
              megabytes of memory to use before writing to temp files. [default: 2800]

       --parent, -p
              for gff only. given rows with same chrom and start put those with a 'Parent' attribute first

       --help, -h
              display this help and exit

Synopsis

gsort [--chromosomemappingsCHROMOSOMEMAPPINGS] [--memoryMEMORY] [--parent] PATHGENOME

See Also