gsort - sort genomic data
Contents
Description
Positionalarguments:
PATH a tab-delimited file to sort
GENOME a genome file of chromosome sizes and order
Name
gsort - sort genomic data
Options
--chromosomemappings CHROMOSOMEMAPPINGS, -c CHROMOSOMEMAPPINGS
a file used to re-map chromosome names for example from hg19 to GRCh37
--memory MEMORY, -m MEMORY
megabytes of memory to use before writing to temp files. [default: 2800]
--parent, -p
for gff only. given rows with same chrom and start put those with a 'Parent' attribute first
--help, -h
display this help and exit
Synopsis
gsort [--chromosomemappingsCHROMOSOMEMAPPINGS] [--memoryMEMORY] [--parent] PATHGENOME
