hmm2fetch - retrieve an HMM from an HMM database

       Sean Eddy
       HHMI/Dept. of Genetics
       Washington Univ. School of Medicine
       4566 Scott Ave.
       St Louis, MO 63110 USA
       http://www.genetics.wustl.edu/eddy/

HMMER 2.3.2                                         Oct 2003                                        hmm2fetch(1)

       Copyright (C) 1992-2003 HHMI/Washington University School of Medicine.
       Freely distributed under the GNU General Public License (GPL).
       See the file COPYING in your distribution for details on redistribution conditions.

hmm2fetch  is  a  small  utility  that  retrieves  an  HMM called name from a HMMER model database called
       database.  in a new format, and prints that model to standard output.  For example,  hmm2fetchPfamrrm
       retrieves  the RRM (RNA recognition motif) model from Pfam, if the environment variable HMMERDB is set to
       the location of the Pfam database.  The retrieved HMM file is written in HMMER 2 ASCII format.

       The database must have an associated GSI  index  file.   To  index  an  HMM  database,  use  the  program
       hmm2index.

       hmm2fetch - retrieve an HMM from an HMM database

-h     Print brief help; includes version number and summary of all options, including expert options.

       -n     Interpret  name  as an HMM number instead of a name. Numbering starts at 0.  For example, to fetch
              the first HMM from an HMM database called foo, you would do hmm2fetch-n0foo.

       Master man page, with full list of and guide to the individual man pages: see hmmer2(1).

       For          complete           documentation,           see           the           user           guide
       (ftp://selab.janelia.org/pub/software/hmmer/2.3.2/Userguide.pdf);    or   see   the   HMMER   web   page,
       http://hmmer.janelia.org/.

hmm2fetch[options]databasename