kalignfmt - Global and progressive multiple sequence alignment

Copyright

       Copyright © 2006,2019,2020,2021 Timo Lassmann

       This program comes with ABSOLUTELY NO WARRANTY; for details type: `kalign -showw'.
       This  is  free  software,  and  you  are welcome to redistribute it under certain conditions; consult the
       COPYING file for details.

   Pleasecite:
              Lassmann, Timo.  "Kalign 3: multiple sequence  alignment  of  large  data  sets."   Bioinformatics
              (2019) https://doi.org/10.1093/bioinformatics/btz795

kalignfmt 3.3.4                                   November 2022                                     KALIGNFMT(1)

Description

       Kalign (3.3.4)

Examples

       Passing sequences via stdin:

              cat input.fa | kalign -f fasta > out.afa

       Combining multiple input files:

              kalign seqsA.fa seqsB.fa seqsC.fa -f fasta > combined.afa

Name

       kalignfmt - Global and progressive multiple sequence alignment

Options

--format
              : Output format. [Fasta]

       --reformat
              : Reformat existing alignment. [NA]

       --changename
              : Change sequence names to 1 .. N. [NA]

       --unalign
              : Remove gaps and write to fasta. [NA]

       --clean
              : Perform additional checks on alignment. [NA]

       --version (-V/-v)
              : Prints version. [NA]