last-map-probs - Add extra column with mapping probabilities

       Calculate  a  mismap probability for each alignment.  This is the probability that the alignment does not
       reflect the origin of the query sequence, assuming that one reported alignment does reflect the origin of
       each query.

       last-map-probs - Add extra column with mapping probabilities

-h, --help
              show this help message and exit

       -m M, --mismap=M
              don't write alignments with mismap probability > M (default: 0.01)

       -s S, --score=S
              don't write alignments with score < S (default: e+t*ln[1000])

last-map-probs 712                                December 2015                                LAST-MAP-PROBS(1)

last-map-probs [options] lastal-alignments