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lav2murasaki.pl -- convert a LAV file (ie: from Blastz) into a Murasaki set of files

Comments

       You and Toadofsky make beautiful music!

perl v5.40.0                                       2024-11-30                                    LAV2MURASAKI(1)

Name

       lav2murasaki.pl -- convert a LAV file (ie: from Blastz) into a Murasaki set of files

Options

       --ungapped|-u => LAV files have "gapped regions" composed of "ungapped regions". Using this option
       creates 1 anchor for each ungapped region (this also provides a .bitscore file, as each ungapped region
       contains a percent identity field).

       --verbose|-v => More verbose output to stdout. Can be applied up to 3 times (anything beyond 1 gets messy
       though, as each anchor gets 1 line of output).

Synopsis

       lav2murasaki.pl [options] <input file>

See Also