lefse_plot_cladogram.py - determine features of organisms, clades, taxonomic units, genes

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

lefse_plot_cladogram.py 1.1.2                    September 2021                       LEFSE_PLOT_CLADOGRAM.PY(1)

       usage: lefse_plot_cladogram.py [-h] [--clade_sep CLADE_SEP]

       [--max_lev MAX_LEV]
              [--max_point_size    MAX_POINT_SIZE]    [--min_point_size    MIN_POINT_SIZE]   [--point_edge_width
              MARKEREDGEWIDTH] [--siblings_connector_width SIBLINGS_CONNECTOR_WIDTH]  [--parents_connector_width
              PARENTS_CONNECTOR_WIDTH]      [--radial_start_lev      RADIAL_START_LEV]      [--labeled_start_lev
              LABELED_START_LEV]   [--labeled_stop_lev   LABELED_STOP_LEV]   [--abrv_start_lev   ABRV_START_LEV]
              [--abrv_stop_lev    ABRV_STOP_LEV]    [--expand_void_lev    EXPAND_VOID_LEV]   [--class_legend_vis
              CLASS_LEGEND_VIS]  [--colored_connector  COLORED_CONNECTORS]  [--alpha  ALPHA]   [--title   TITLE]
              [--sub_clade    SUB_CLADE]   [--title_font_size   TITLE_FONT_SIZE]   [--right_space_prop   R_PROP]
              [--left_space_prop  L_PROP]   [--label_font_size   LABEL_FONT_SIZE]   [--background_color   {k,w}]
              [--colored_labels  {0,1}]  [--class_legend_font_size CLASS_LEGEND_FONT_SIZE] [--dpi DPI] [--format
              {png,svg,pdf}] [--all_feats ALL_FEATS] INPUT_FILE OUTPUT_FILE

       Cladoplot

   positionalarguments:
       INPUT_FILE
              tab delimited input file

       OUTPUT_FILE
              the file for the output image

   optionalarguments:-h, --help
              show this help message and exit

       --clade_sep CLADE_SEP

       --max_lev MAX_LEV

       --max_point_size MAX_POINT_SIZE

       --min_point_size MIN_POINT_SIZE

       --point_edge_width MARKEREDGEWIDTH

       --siblings_connector_width SIBLINGS_CONNECTOR_WIDTH

       --parents_connector_width PARENTS_CONNECTOR_WIDTH

       --radial_start_lev RADIAL_START_LEV

       --labeled_start_lev LABELED_START_LEV

       --labeled_stop_lev LABELED_STOP_LEV

       --abrv_start_lev ABRV_START_LEV

       --abrv_stop_lev ABRV_STOP_LEV

       --expand_void_lev EXPAND_VOID_LEV

       --class_legend_vis CLASS_LEGEND_VIS

       --colored_connector COLORED_CONNECTORS

       --alpha ALPHA

       --title TITLE

       --sub_clade SUB_CLADE

       --title_font_size TITLE_FONT_SIZE

       --right_space_prop R_PROP

       --left_space_prop L_PROP

       --label_font_size LABEL_FONT_SIZE

       --background_color {k,w}
              set the color of the background

       --colored_labels {0,1}
              draw the label with class color (1) or in black (0)

       --class_legend_font_size CLASS_LEGEND_FONT_SIZE

       --dpi DPI

       --format {png,svg,pdf}
              the format for the output file

       --all_feats ALL_FEATS

       lefse_plot_cladogram.py - determine features of organisms, clades, taxonomic units, genes