lefse_plot_res.py - determine features of organisms, clades, taxonomic units, genes

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

lefse_plot_res.py 1.1.2                          September 2021                             LEFSE_PLOT_RES.PY(1)

       usage: lefse_plot_res.py [-h] [--feature_font_size FEATURE_FONT_SIZE]

       [--format {png,svg,pdf}] [--dpi DPI] [--title TITLE]
              [--title_font_size  TITLE_FONT_SIZE]  [--class_legend_font_size  CLASS_LEGEND_FONT_SIZE]  [--width
              WIDTH] [--height HEIGHT] [--left_space LS] [--right_space RS] [--orientation  {h,v}]  [--autoscale
              {0,1}]   [--background_color   {k,w}]   [--subclades  N_SCL]  [--max_feature_len  MAX_FEATURE_LEN]
              [--all_feats ALL_FEATS] [--otu_only] [--report_features] INPUT_FILE OUTPUT_FILE

       Plot results

   positionalarguments:
       INPUT_FILE
              tab delimited input file

       OUTPUT_FILE
              the file for the output image

   optionalarguments:-h, --help
              show this help message and exit

       --feature_font_size FEATURE_FONT_SIZE
              the file for the output image

       --format {png,svg,pdf}
              the format for the output file

       --dpi DPI

       --title TITLE

       --title_font_size TITLE_FONT_SIZE

       --class_legend_font_size CLASS_LEGEND_FONT_SIZE

       --width WIDTH

       --height HEIGHT
              only for vertical histograms

       --left_space LS

       --right_space RS

       --orientation {h,v}

       --autoscale {0,1}

       --background_color {k,w}
              set the color of the background

       --subclades N_SCL
              number of label levels to be displayed (starting from the leaves, -1 means all the  levels,  1  is
              default )

       --max_feature_len MAX_FEATURE_LEN
              Maximum length of feature strings (def 60)

       --all_feats ALL_FEATS

       --otu_only
              Plot only species resolved OTUs (as opposed to all levels)

       --report_features
              Report important features to STDOUT

       lefse_plot_res.py - determine features of organisms, clades, taxonomic units, genes