map_db - read a FASTA (0), GENBANK flat file (1) PIR/VMS (5) or GCG binary (6) sequence database and
Contents
Bugs
Description
map_dbfilename reads the sequence database in filename and produce a new file filename.xin with the
offset information necessary for efficient memory mapping.
The programs in fasta version 32t08 can use memory mapped i/o to load sequence database files and read
them efficiently. Memory mapping is used only if a ".xin" file is available. The ".xin" file is created
by map_db.
In addition to map_db, list_db is available to display the database size, etc, and set of offsets
calculated by map_db.
Name
map_db - read a FASTA (0), GENBANK flat file (1) PIR/VMS (5) or GCG binary (6) sequence database and
produce the offsets necessary for efficient memory mapping.
Options
-n Read file as DNA database.
Synopsis
map_db [-n] filename | "filename libtype"
