maqindex - maqview indexing

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

maqindex 0.2.5                                    December 2015                                      MAQINDEX(1)

       maqindex - maqview indexing

-l INT level for indexing [1024]

       -c STR .cns file for this .map file

       -i     index the map file

       -v     display the alignment in the mapview format

       -b     dump in the .map format

maqindex<-i|-v|-b> [-llevel] [-ccns] <in.map> [chr[:begin[-end]] [...]]