mash - fast genome and metagenome distance estimation using MinHash
Contents
Description
mash is the main executable for the Mash software. The actual functionality is provided by the subtools
('commands'):
Commandsbounds
Print a table of Mash error bounds.
dist
Estimate the distance of query sequences to references.
info
Display information about sketch files.
paste
Create a single sketch file from multiple sketch files.
screen
Determine whether query sequences are within a larger pool of sequences.
sketch
Create sketches (reduced representations for fast operations).
triangle
Estimate a lower-triangular distance matrix.
Name
mash - fast genome and metagenome distance estimation using MinHash
See Also
mash-dist(1), mash-info(1), mash-paste(1), mash-screen(1), mash-sketch(1), mash-triangle(1) 2019-12-13 MASH(1)
Synopsis
mash <command> [options] [arguments ...]
