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mason_genome - Random Genome Simulation

Description

       Simulate  a random genome to the output file.  For each -l/--contig-length entry, a contig with the given
       length will be simulated.

Examples

mason_genome-l 1000 -l 4000 -ogenome.fa
              Simulate a genome with two contigs of lengths 1000 and 4000 and write it to genome.fa.

mason_genome 2.0.9 [tarball]                                                                     MASON_GENOME(1)

Name

       mason_genome - Random Genome Simulation

Options

-h, --help
              Display the help message.

       --version
              Display version information.

       -q, --quiet
              Set verbosity to a minimum.

       -v, --verbose
              Enable verbose output.

       -vv, --very-verbose
              Enable very verbose output.

   SimulationConfiguration:-l, --contig-length List of INTEGER's
              Length of the contig to simulate. Give one  -l  value  for  each  contig  to  simulate.  In  range
              [1..inf].

       -s, --seedINTEGER
              The seed to use for the random number generator. Default: 0.

   OutputOptions:-o, --out-fileOUTPUT_FILE
              Output  file.  Valid  filetypes  are:  .sam[.*],  .raw[.*], .frn[.*], .fq[.*], .fna[.*], .ffn[.*],
              .fastq[.*], .fasta[.*], .faa[.*], .fa[.*], and .bam, where * is any of the  following  extensions:
              gz, bz2, and bgzf for transparent (de)compression.

Synopsis

mason_genome [OPTIONS] [-lLEN]+ -oOUT.fa

See Also