mason_genome - Random Genome Simulation
Contents
Description
Simulate a random genome to the output file. For each -l/--contig-length entry, a contig with the given
length will be simulated.
Examples
mason_genome-l 1000 -l 4000 -ogenome.fa
Simulate a genome with two contigs of lengths 1000 and 4000 and write it to genome.fa.
mason_genome 2.0.9 [tarball] MASON_GENOME(1)
Name
mason_genome - Random Genome Simulation
Options
-h, --help
Display the help message.
--version
Display version information.
-q, --quiet
Set verbosity to a minimum.
-v, --verbose
Enable verbose output.
-vv, --very-verbose
Enable very verbose output.
SimulationConfiguration:-l, --contig-length List of INTEGER's
Length of the contig to simulate. Give one -l value for each contig to simulate. In range
[1..inf].
-s, --seedINTEGER
The seed to use for the random number generator. Default: 0.
OutputOptions:-o, --out-fileOUTPUT_FILE
Output file. Valid filetypes are: .sam[.*], .raw[.*], .frn[.*], .fq[.*], .fna[.*], .ffn[.*],
.fastq[.*], .fasta[.*], .faa[.*], .fa[.*], and .bam, where * is any of the following extensions:
gz, bz2, and bgzf for transparent (de)compression.
Synopsis
mason_genome [OPTIONS] [-lLEN]+ -oOUT.fa
