megamerger - Merge two large overlapping DNA sequences

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EMBOSS 6.4.0                                       05/11/2012                                     MEGAMERGER(1e)

megamerger is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Alignment:Consensus" command group(s).

       megamerger - Merge two large overlapping DNA sequences

Inputsection-asequencesequence-bsequencesequenceRequiredsection-wordsizeinteger
           Default value: 20

   Additionalsection-preferboolean
           When a mismatch between the two sequence is discovered, one or other of the two sequences must be
           used to create the merged sequence over this mismatch region. The default action is to create the
           merged sequence using the sequence where the mismatch is closest to that sequence's centre. If this
           option is used, then the first sequence (seqa) will always be used in preference to the other
           sequence when there is a mismatch. Default value: N

   Outputsection-outseqseqout-outfileoutfile

       megamerger is fully documented via the tfm(1) system.

megamerger-asequencesequence-bsequencesequence-wordsizeinteger [-preferboolean] -outseqseqout-outfileoutfilemegamerger-help