mhap - probabilistic sequence overlapping
Contents
Description
MHAP (MinHash Alignment Protocol) is a tool for finding overlaps of long-read sequences (such as PacBio
or Nanopore) in bioinformatics.
Name
mhap - probabilistic sequence overlapping
Options
-h--help
Show summary of available options.
--version
Displays the version.
mhap July 2016 MHAP(1)
Synopsis
mhap-s<fasta/dat from/self file> [-q<fasta/dat to file>] [-f<kmer filter list, must be sorted>]
java-server-Xmx<memory> -jar $(which mhap) -s<fasta/dat from/self file> [-q<fasta/dat to file>]
[-f<kmer filter list, must be sorted>]
generate precomputed binaries:
java-server-Xmx<memory> -jar $(which mhap) -p<directory of fasta files> -q <output directory> [-f<kmer
filter list, must be sorted>]
