mia-meshdistance-to-stackmask - Evaluate the distance between a binary shape given as reference and a

       Gert Wollny

       This  software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain.  It comes  with  ABSOLUTELY
       NO WARRANTY  and  you  may redistribute it under the terms of the GNU GENERAL PUBLIC  LICENSE  Version  3
       (or later). For more information run the program with the option '--copyright'.

USER COMMANDS                                        v2.4.7                     mia-meshdistance-to-stackmask(1)

mia-meshdistance-to-stackmask This program takes a binary masks  and  a  triangular  mesh  as  input  and
       evaluates the distance of the mesh vertices to the binary maskand stores the result in a new mesh.

       Evaluate the distance of the mask given in the images maskXXXX.png to the mesh given in mesh.v  and  save
       the result to mesh-dist.v

       mia-meshdistance-to-stackmask -i mesh.v -r maskXXXX.png -o mesh-dist.v

       mia-meshdistance-to-stackmask  -  Evaluate  the  distance between a binary shape given as reference and a
       mesh.

              -i --in-mesh=(required, input); io
                     input mesh
                      For supported file types see PLUGINS:mesh/io

              -r --ref-mask=(required, input); io
                     reference binary mask
                      For supported file types see PLUGINS:2dimage/io

              -o --out-mesh=(required, output); io
                     output mesh
                      For supported file types see PLUGINS:mesh/io

   Help&Info
              -V --verbose=warning
                     verbosity  of  output,  print  messages  of  given  level  and higher priorities. Supported
                     priorities starting at lowest level are:

                        trace ‐ Function call trace
                        debug ‐ Debug output
                        info ‐ Low level messages
                        message ‐ Normal messages
                        warning ‐ Warnings
                        fail ‐ Report test failures
                        error ‐ Report errors
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower  or  equal  to
                     the number of logical processor cores in the machine. (-1: automatic estimation).

bmp       BMP  2D-image  input/output  support. The plug-in supports reading and writing of binary images
                 and 8-bit gray scale images. read-only support is provided for 4-bit  gray  scale  images.  The
                 color table is ignored and the pixel values are taken as literal gray scale values.

                     Recognized file extensions:  .BMP, .bmp

                     Supported element types:
                       binary data, unsigned 8 bit

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       dicom     2D image io for DICOM

                     Recognized file extensions:  .DCM, .dcm

                     Supported element types:
                       signed 16 bit, unsigned 16 bit

       exr       a 2dimage io plugin for OpenEXR images

                     Recognized file extensions:  .EXR, .exr

                     Supported element types:
                       unsigned 32 bit, floating point 32 bit

       jpg       a 2dimage io plugin for jpeg gray scale images

                     Recognized file extensions:  .JPEG, .JPG, .jpeg, .jpg

                     Supported element types:
                       unsigned 8 bit

       png       a 2dimage io plugin for png images

                     Recognized file extensions:  .PNG, .png

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit

       raw       RAW 2D-image output support

                     Recognized file extensions:  .RAW, .raw

                     Supported element types:
                       binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit,
                       unsigned 32 bit, floating point 32 bit, floating point 64 bit

       tif       TIFF 2D-image input/output support

                     Recognized file extensions:  .TIF, .TIFF, .tif, .tiff

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit

       vista     a 2dimage io plugin for vista images

                     Recognized file extensions:  .-, .V, .VISTA, .v, .vista

                     Supported element types:
                       binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit,
                       unsigned 32 bit, floating point 32 bit, floating point 64 bit

datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       off       plugin to load/store some Geomview OFF files. Supported is only the ASCII format 3D meshes with
                 normales  and  per-vertex RGB colors. Alpha values and texture coordinates, as well as per face
                 properties are ignored. Polygons are read and triangulated.

                     Recognized file extensions:  .OFF, .off

       ply       Ply triangle mesh input/output support

                     Recognized file extensions:  .PLY, .ply

       stl       STL mesh io plugin

                     Recognized file extensions:  .STL, .stl

       vista     Vista/Simbio triangle mesh input/output support

                     Recognized file extensions:  .-, .V, .VMESH, .v, .vmesh

       vtk       A subset of VTK mesh in-and output: Triangle  meshes  are  written,  and  triangle  meshes  and
                 triangle  strips  are read. Additional per-vertex attributes are supported: 'normals', 'colors'
                 for three component colors, and 'scale' for a scalar value attached to each vertex. The data is
                 written by the vtkPolyDataWriter in binary format.

                     Recognized file extensions:  .VTK, .VTKMESH, .vtk, .vtkmesh

mia-meshdistance-to-stackmask-i<in-mesh>-r<ref-mask>-o<out-mesh>[options]