msbar - Mutate a sequence

DebianMedPackagingTeam <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

EMBOSS 6.4.0                                       05/11/2012                                          MSBAR(1e)

msbar is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is
       part of the "Nucleic:Mutation,Protein:Mutation" command group(s).

       msbar - Mutate a sequence

Inputsection-sequenceseqall-othersequenceseqall
           If you require that the resulting mutated sequence should not match a set of other sequences, then
           you can specify that set of sequences here. For example, if you require that the mutated sequence
           should not be the same as the input sequence, enter the input sequence here. If you want the result
           to be different to previous results of this program, specify the previous result sequences here. The
           program will check that the result does not match the sequences specified here before writing it out.
           If a match is found, then the mutation is started again with a fresh copy of the input sequence. If,
           after 10 such retries, there is still a match to the set of sequence given here, then the matching
           mutated sequence is written with a warning message. Default value: asis:N

   Requiredsection-countinteger
           Default value: 1

       -pointlist-blocklist-codonlist
           Types of codon mutations to perform. These are only done if the sequence is nucleic.

   Additionalsection-inframeboolean
           Default value: N

   Advancedsection-minimuminteger
           Default value: 1

       -maximuminteger
           Default value: 10

   Outputsection-outseqseqoutall

       msbar is fully documented via the tfm(1) system.

msbar-sequenceseqall-othersequenceseqall-countinteger-pointlist-blocklist-codonlist-inframeboolean-minimuminteger-maximuminteger-outseqseqoutallmsbar-help