NanoStat - manual page for NanoStat 1.4.0

       usage: NanoStat [-h] [-v] [-o OUTDIR] [-p PREFIX] [-n NAME] [-t N] [--tsv]

              [--barcoded]  [--readtype  {1D,2D,1D2}]  (--fastq  file  [file  ...]  |  --fasta file [file ...] |
              --summary file [file ...] | --bam file [file ...] | --ubam file [file ...]  |  --cram  file  [file
              ...] | --feather file [file ...])

       Calculate statistics of long read sequencing dataset.

   Generaloptions:-h, --help
              show the help and exit

       -v, --version
              Print version and exit.

       -o, --outdir OUTDIR
              Specify directory for output, only in combination with -n.

       -p, --prefix PREFIX
              Specify an optional prefix to be used for the output file.

       -n, --name NAME
              Specify a filename/path for the output, stdout is the default.

       -t, --threads N
              Set the allowed number of threads to be used by the script.

       --tsv  Output the stats as a properly formatted TSV.

   Inputoptions.:--barcoded
              Use if you want to split the summary file by barcode

       --readtype {1D,2D,1D2}
              Which read type to extract information about from summary. Options are 1D, 2D, 1D2

   Inputdatasources,oneoftheseisrequired.:--fastq file [file ...]
              Data is in one or more (compressed) fastq file(s).

       --fasta file [file ...]
              Data is in one or more (compressed) fasta file(s).

       --summary file [file ...]
              Data is in one or more (compressed) summary file(s)generated by albacore or guppy.

       --bam file [file ...]
              Data is in one or more sorted bam file(s).

       --ubam file [file ...]
              Data is in one or more unmapped bam file(s).

       --cram file [file ...]
              Data is in one or more sorted cram file(s).

       --feather file [file ...]
              Data is in one or more feather file(s).

   EXAMPLES:
              NanoStat  --fastq  reads.fastq.gz  --outdir statreports NanoStat --summary sequencing_summary1.txt
              sequencing_summary2.txtsequencing_summary3.txt  --readtype  1D2   NanoStat   --bam   alignment.bam
              alignment2.bam

       NanoStat - manual page for NanoStat 1.4.0

       The full documentation for NanoStat is maintained as a Texinfo manual.  If the info and NanoStat programs
       are properly installed at your site, the command

              infoNanoStat

       should give you access to the complete manual.

NanoStat 1.4.0                                    December 2020                                      NANOSTAT(1)