newcpgreport - Identify CpG islands in nucleotide sequence(s)

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       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

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EMBOSS 6.4.0                                       05/11/2012                                   NEWCPGREPORT(1e)

newcpgreport is a command line program from EMBOSS (“the European Molecular Biology Open Software
       Suite”). It is part of the "Nucleic:CpG Islands" command group(s).

       newcpgreport - Identify CpG islands in nucleotide sequence(s)

Inputsection-sequenceseqallRequiredsection-windowinteger
           Default value: 100

       -shiftinteger
           Default value: 1

       -minleninteger
           Default value: 200

       -minoefloat
           Default value: 0.6

       -minpcfloat
           Default value: 50.

   Outputsection-outfileoutfile

       newcpgreport is fully documented via the tfm(1) system.

newcpgreport-sequenceseqall-windowinteger-shiftinteger-minleninteger-minoefloat-minpcfloat-outfileoutfilenewcpgreport-help