nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets
Contents
Description
nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets
complete with mRNA transcripts, which it outputs as text ASN.1.
Name
nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets
Options
A summary of options is included below.
- Print usage message
-B NG and NR rRNA
-D RefSeq mRNA Titles
-F Map by Feature ID
-Gstr General ID database name
-L Lock components in advance
-N Promote Non-coding RNAs
-P mRNA ID from Protein
-Q Special mRNA titles
-R Enable Remote fetching from ID
-S Special ncRNA on preRNA
-T Map by Transcript ID
-U Remove Unnecessary gene cross-references
-fstr Substring filter
-ifilename
Single input file (default = stdin)
-ofilename
Single output file (default = stdout)
-ppath
Path to files for batch conversion
-rpath
Path for results of batch conversion
-xstr File selection suffix for batch conversion (default = .ent)
See Also
asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1). NCBI Tools User's Manual 2016-09-01 NPS2GPS(1)
Synopsis
nps2gps [-] [-B] [-D] [-F] [-Gstr] [-L] [-N] [-P] [-Q] [-R] [-S] [-T] [-U] [-fstr] [-ifilename]
[-ofilename] [-ppath] [-rpath] [-xstr]
