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nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets

Author

       The National Center for Biotechnology Information.

Description

nps2gps converts NCBI Bioseq-sets from simple  nucleotide-protein  sets  to  full  genomic  product  sets
       complete with mRNA transcripts, which it outputs as text ASN.1.

Name

       nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets

Options

       A summary of options is included below.

       -      Print usage message

       -B     NG and NR rRNA

       -D     RefSeq mRNA Titles

       -F     Map by Feature ID

       -Gstr General ID database name

       -L     Lock components in advance

       -N     Promote Non-coding RNAs

       -P     mRNA ID from Protein

       -Q     Special mRNA titles

       -R     Enable Remote fetching from ID

       -S     Special ncRNA on preRNA

       -T     Map by Transcript ID

       -U     Remove Unnecessary gene cross-references

       -fstr Substring filter

       -ifilename
              Single input file (default = stdin)

       -ofilename
              Single output file (default = stdout)

       -ppath
              Path to files for batch conversion

       -rpath
              Path for results of batch conversion

       -xstr File selection suffix for batch conversion (default = .ent)

See Also

asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).

NCBI Tools User's Manual                           2016-09-01                                         NPS2GPS(1)

Synopsis

nps2gps  [-]  [-B]  [-D]  [-F]  [-Gstr]  [-L]  [-N] [-P] [-Q] [-R] [-S] [-T] [-U] [-fstr] [-ifilename]
       [-ofilename] [-ppath] [-rpath] [-xstr]

See Also