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nthll - Streaming algorithm to estimate cardinality in genomics datasets

Author

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.

nthll 1.2.2                                        April 2021                                           NTHLL(1)

Description

       Estimates distinct number of k-mers in FILE(S).

       Acceptable  file  formats:  fastq,  fasta, sam, bam and in compressed formats gz, bz, zip, xz.  Accepts a
       list of files by adding @ at the beginning of the list name.

              Options:

       -t, --threads=N
              use N parallel threads [1] (N>=2 should be used when input files are >=2)

       -k, --kmer=N
              the length of kmer [64]

       --help display this help and exit

       --version output version information and exit

Name

       nthll - Streaming algorithm to estimate cardinality in genomics datasets

Reporting Bugs

       Report bugs to https://github.com/bcgsc/ntCard/issues

Synopsis

nthll [OPTION]... FILE(S)...

See Also