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obminimize — optimize the geometry, minimize the energy for a molecule

Authors

       The minimize program was contributed by Tim Vandermeersch.

       Open Babel is developed by a cast of many, including currrent maintainers Geoff Hutchison, Chris  Morley,
       Michael Banck, and innumerable others who have contributed fixes and additions.  For more contributors to
       Open Babel, see <http://openbabel.org/wiki/THANKS>

Description

       The obminimize tool can be used to minimize the energy for molecules inside (multi-)molecule files (e.g.,
       MOL2, etc.)

Examples

       View the possible options, including available forcefields:
             obminimize

       Minimize the energy for the molecule(s) in file test.mol2:
             obminimizetest.mol2

       Minimize the energy for the molecule(s) in file test.mol2 using the Ghemical forcefield:
             obminimize-ffGhemicaltest.mol2

       Minimize  the  energy  for  the molecule(s) in file test.mol2 by taking at most 300 geometry optimization
       steps
             obminimize-n300test.mol2

       Minimize the energy for the molecule(s) in file  test.mol2  using  the  steepest  descent  algorithm  and
       convergence criteria 1e-5:
             obminimize-sd-c1e-5test.mol2

Name

       obminimize — optimize the geometry, minimize the energy for a molecule

Options

       If no filename is given, obminimize will give all options including the available forcefields.

       -nsteps
             Specify the maximum number of steps (default=2500)

       -cg   Use conjugate gradients algorithm (default)

       -sd   Use steepest descent algorithm

       -ccriteria
             Set convergence criteria (default=1e-6)

       -ffforcefield
             Select the forcefield

See Also

obabel(1), obenergy(1), obrotamer(1).

       The web pages for Open Babel can be found at: <http://openbabel.org/>

       The     web     pages     for     Open     Babel     Molecular     Mechanics    can    be    found    at:
       <http://openbabel.org/wiki/Molecular_mechanics>

Synopsis

obminimize [OPTIONS] filename

See Also