obminimize — optimize the geometry, minimize the energy for a molecule
Contents
Copyright
Copyright (C) 2007 by Tim Vandermeersch.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU
General Public License as published by the Free Software Foundation version 2 of the License.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public
License for more details.
Open Babel 3.1 Oct 10, 2019 obminimize(1)
Description
The obminimize tool can be used to minimize the energy for molecules inside (multi-)molecule files (e.g.,
MOL2, etc.)
Examples
View the possible options, including available forcefields:
obminimize
Minimize the energy for the molecule(s) in file test.mol2:
obminimizetest.mol2
Minimize the energy for the molecule(s) in file test.mol2 using the Ghemical forcefield:
obminimize-ffGhemicaltest.mol2
Minimize the energy for the molecule(s) in file test.mol2 by taking at most 300 geometry optimization
steps
obminimize-n300test.mol2
Minimize the energy for the molecule(s) in file test.mol2 using the steepest descent algorithm and
convergence criteria 1e-5:
obminimize-sd-c1e-5test.mol2Name
obminimize — optimize the geometry, minimize the energy for a molecule
Options
If no filename is given, obminimize will give all options including the available forcefields.
-nsteps
Specify the maximum number of steps (default=2500)
-cg Use conjugate gradients algorithm (default)
-sd Use steepest descent algorithm
-ccriteria
Set convergence criteria (default=1e-6)
-ffforcefield
Select the forcefield
See Also
obabel(1), obenergy(1), obrotamer(1). The web pages for Open Babel can be found at: <http://openbabel.org/> The web pages for Open Babel Molecular Mechanics can be found at: <http://openbabel.org/wiki/Molecular_mechanics>
Synopsis
obminimize [OPTIONS] filename
