obprop — print standard molecular properties
Contents
Copyright
Copyright (C) 2003 by Fabien Fontaine
Some portions Copyright (C) 2004-2007 by Geoffrey R. Hutchison and other contributors.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU
General Public License as published by the Free Software Foundation version 2 of the License.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public
License for more details.
Open Babel 3.1 Oct 10, 2019 obprop(1)
Description
The obprop program is a tool to print a set of standard molecular properties for all molecules in a file.
It also serves as example code for using the Open Babel library (libopenbabel).
Output format includes:
name [Name]
formula [Formula]
mol_weight [MolecularWeight]
exact_mass [IsotopicMass]
canonical_SMILES [String]
num_atoms [Number]
num_bonds [Number]
num_residues [Number]
sequence [ResidueSequence]
num_rings [NumberofRings(bySSSR)]
logP [Number(octanol-waterpartition)]
PSA [Number(topologicalpolarsurfacearea)]
MR [Number(molarrefractivity)]
$$$
The "$$$" is the separator between multiple molecular entries in a file
Examples
obproppyridines.sdf
Name
obprop — print standard molecular properties
See Also
obabel(1), obchiral(1), obfit(1), obgrep(1), obrotate(1). The web pages for Open Babel can be found at: <http://openbabel.org/>
Synopsis
obpropfilename
