oddcomp - Identify proteins with specified sequence word composition

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           Wrote the script used to autogenerate this manual page.

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
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EMBOSS 6.4.0                                       05/11/2012                                        ODDCOMP(1e)

oddcomp is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Protein:Composition" command group(s).

       oddcomp - Identify proteins with specified sequence word composition

Inputsection-sequenceseqall-infileinfile
           This is a file in the format of the output produced by 'compseq' that is used to set the minimum
           frequencies of words in this analysis.

   Requiredsection-fullwindowtoggle
           Set this option on (Y) if you want the window size to be set to the length of the current protein.
           Otherwise, leave this option unset, in which case you'll be prompted for a window size to use.
           Default value: N

       -windowinteger
           This is the size of window in which to count. Thus if you want to count frequencies in a 40 aa
           stretch you should enter 40 here. Default value: 30

   Advancedsection-ignorebzboolean
           The amino acid code B represents Asparagine or Aspartic acid and the code Z represents Glutamine or
           Glutamic acid. These are not commonly used codes and you may wish not to count words containing them,
           just noting them in the count of 'Other' words. Default value: Y

   Outputsection-outfileoutfile
           This is the results file.

       oddcomp is fully documented via the tfm(1) system.

oddcomp-sequenceseqall-infileinfile-fullwindowtoggle-windowinteger-ignorebzboolean-outfileoutfileoddcomp-help