patmatdb - Searches protein sequences with a sequence motif

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       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

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EMBOSS 6.4.0                                       05/11/2012                                       PATMATDB(1e)

patmatdb is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Protein:Motifs" command group(s).

       patmatdb - Searches protein sequences with a sequence motif

Inputsection-sequenceseqallRequiredsection-motifstring
           Patterns for patmatdb are based on the format of pattern used in the PROSITE database. For example:
           '[DE](2)HS{P}X(2)PX(2,4)C' means two Asps or Glus in any order followed by His, Ser, any residue
           other then Pro, then two of any residue followed by Pro followed by two to four of any residue
           followed by Cys. The search is case-independent, so 'AAA' matches 'aaa'.

   Outputsection-outfilereport

       patmatdb is fully documented via the tfm(1) system.

patmatdb-sequenceseqall-motifstring-outfilereportpatmatdb-help