patmatmotifs - Scan a protein sequence with motifs from the PROSITE database

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       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

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EMBOSS 6.4.0                                       05/11/2012                                   PATMATMOTIFS(1e)

patmatmotifs is a command line program from EMBOSS (“the European Molecular Biology Open Software
       Suite”). It is part of the "Protein:Motifs" command group(s).

       patmatmotifs - Scan a protein sequence with motifs from the PROSITE database

Inputsection-sequencesequenceAdditionalsection-fullboolean
           Default value: N

       -pruneboolean
           Ignore simple patterns. If this is true then these simple post-translational modification sites are
           not reported: myristyl, asn_glycosylation, camp_phospho_site, pkc_phospho_site, ck2_phospho_site, and
           tyr_phospho_site. Default value: Y

   Outputsection-outfilereport

       patmatmotifs is fully documented via the tfm(1) system.

patmatmotifs-sequencesequence [-fullboolean] [-pruneboolean] -outfilereportpatmatmotifs-help