pepnet - Draw a helical net for a protein sequence

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           Wrote the script used to autogenerate this manual page.

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

EMBOSS 6.4.0                                       05/11/2012                                         PEPNET(1e)

pepnet is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Display,Protein:2D Structure" command group(s).

       pepnet - Draw a helical net for a protein sequence

Inputsection-sequencesequenceOutputsection-amphipathictoggle
           If this is true then the residues ACFGILMVWY are marked as squares and all other residues are
           unmarked. This overrides any other markup that you may have specified using the qualifiers
           '-squares', '-diamonds' and '-octags'.

       -squaresstring
           By default the aliphatic residues ILVM are marked with squares. Default value: ILVM

       -diamondsstring
           By default the residues DENQST are marked with diamonds. Default value: DENQST

       -octagsstring
           By default the positively charged residues HKR are marked with octagons. Default value: HKR

       -graphgraph

       pepnet is fully documented via the tfm(1) system.

pepnet-sequencesequence-amphipathictoggle-squaresstring-diamondsstring-octagsstring-graphgraphpepnet-help