permuteSmooth

       Erik Garrison and vcflib contributors.

permuteSmooth (vcflib)                                                                          PERMUTESMOOTH(1)

permuteSmooth is a method for adding empirical p-values smoothed wcFst scores.

0      Success

       not0  Failure

       Copyright  2011-2024  (C)  Erik Garrison and vcflib contributors.  MIT licensed.  Copyright 2020-2024 (C)
       Pjotr Prins.

permuteSmooth

              Required:
                    file:     f   -- argument: original wcFst data
                    smoothed: s   -- argument: smoothed wcFst data
                    format:   y   -- argument: [swcFst, segwcFst]
              Optional:
                    number:   n   -- argument: the number of permutations to run for each value [1000]
                    success:  u   -- argument: stop permutations after 's' successes [1]
                    success:  x   -- argument: number of threads [1]

              OUTPUT: **permuteSmooth** will append three additional columns:
                      1. The number of successes
                      2. The number of trials
                      3. The empirical p-value

              Type: statistics

vcflib(1)

permuteSmooth -s wcFst.smooth.txt -f wcFst.txt -n 5 -s 1