picopore-rename - renaming groups and datasets within Oxford Nanopore Technologies FAST5 files

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

picopore-rename 1.2.0                               June 2020                                 PICOPORE-RENAME(1)

       A tool for renaming groups and datasets within Oxford Nanopore Technologies FAST5 files

       picopore-rename - renaming groups and datasets within Oxford Nanopore Technologies FAST5 files

positionalarguments:
       input  list of directories or fast5 files to shrink

   optionalarguments:-h, --help
              show this help message and exit

       -p PATTERN, --pattern PATTERN
              String or regex to replace

       -r REPLACEMENT, --replacement REPLACEMENT
              String or regex replacement for PATTERN

       -v, --version
              show version number and exit

       -y     skip confirm step

       -t INT, --threads INT
              number of threads (Default: 1)

       --prefix STR
              add prefix to output files to prevent overwrite

       --skip-root, --no-skip-root
              ignore files in root input directories for albacore realtime compression (Default: --no-skip-root)

       --print-every INT
              print a dot every approximately INT files, or -1 to silence (Default: 100)

       [-h] -p PATTERN -r REPLACEMENT [-v] [-y] [-t INT] [--prefix STR] [--skip-root] [--print-every INT] [input
       [input ...]]