plink,p-link,plink1 - whole genome SNP analysis

       plink was written by Shaun Purcell <plink@chgr.mgh.harvard.edu>

       This  manual page was written by Steffen Moeller <moeller@debian.org>, for the Debian project (but may be
       used by others).

                                                 April  8, 2008                                        P-LINK(1)

       This  binary was renamed from plink to p-link/plink1 because there is a name clash between this plink and
       a part of the ssh clone putty.  Please read /usr/share/doc/plink/README.Debian to learn more about this.

       Plink works on SNP datasets that have already been pre-analysed for their reliability and  their  calling
       to  AA,  BB  or  AB.  It  finds associations with a disease of single SNPs or pairs, determines haplotype
       blocks or retrieves information on SNPs from an online repository.

       This manual page must be insufficient. Please use the help option for a quick reminder of the options  of
       p-link or turn to its home page with the online documentation or the downloadable manual.

       plink,p-link,plink1 - whole genome SNP analysis

http://pngu.mgh.harvard.edu/~purcell/plink

plink--help