pxfqfilt - filter fastq files by mean quality
Contents
Citation
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
Copyright
Copyright © 2013-2024 FePhyFoFum License GPLv3
pxfqfilt 1.3.1 June 2024 PXFQFILT(1)
Description
Filter fastq files by mean quality. Data can be read from a file or STDIN.
Name
pxfqfilt - filter fastq files by mean quality
Options
-m, --mean=VALUE
mean value under which seqs are filtered
-s, --seqf=FILE
input sequence file, STDIN otherwise
-o, --outf=FILE
output sequence file, STOUT otherwise
-h, --help
display this help and exit
-V, --version
display version and exit
-C, --citation
display phyx citation and exit
Reporting Bugs
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page:
<https://github.com/FePhyFoFum/phyx>
Synopsis
pxfqfilt [OPTIONS]...
