pxs2fa - convert seqfiles from nexus, phylip, fastq to fasta

Author

       Written by Stephen A. Smith (blackrim), Joseph W. Brown

Citation

       Brown,  Joseph  W.,  Joseph  F.  Walker,  and  Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Copyright

       Copyright © 2013-2024 FePhyFoFum License GPLv3

pxs2fa 1.3.1                                        June 2024                                          PXS2FA(1)

Description

       Convert seqfiles from nexus, phylip, fastq to fasta.  Data can be read from a file or STDIN.

Name

       pxs2fa - convert seqfiles from nexus, phylip, fastq to fasta

Options

-s, --seqf=FILE
              input sequence file, STDIN otherwise

       -u, --uppercase
              export characters in uppercase

       -o, --outf=FILE
              output sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

Reporting Bugs

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>