pxs2phy - convert seqfiles from nexus, phylip, or fastq to phylip

Author

       Written by Stephen A. Smith (blackrim), Joseph W. Brown

Citation

       Brown,  Joseph  W.,  Joseph  F.  Walker,  and  Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Copyright

       Copyright © 2013-2024 FePhyFoFum License GPLv3

pxs2phy 1.3.1                                       June 2024                                         PXS2PHY(1)

Description

       Convert seqfiles from nexus, phylip, or fastq to phylip.  Can read from STDIN or file.

       -s, --seqf=FILE
              input sequence file, STDIN otherwise

       -u, --uppercase
              export characters in uppercase

       -o, --outf=FILE
              output sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

Name

       pxs2phy - convert seqfiles from nexus, phylip, or fastq to phylip

Reporting Bugs

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>