pxt2nex - convert from tree file to vanilla Nexus format

Author

       Written by Joseph W. Brown, Stephen A. Smith (blackrim)

Citation

       Brown, Joseph W., Joseph F. Walker, and Stephen A.  Smith.  2017.  Phyx:  phylogenetic  tools  for  unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Copyright

       Copyright © 2021-2024 FePhyFoFum License GPLv3

pxt2nex 1.3.1                                       June 2024                                         PXT2NEX(1)

Description

       This  will convert a tree file to vanilla Nexus format.  This will take a newick- or nexus-formatted tree
       from a file or STDIN.

Name

       pxt2nex - convert from tree file to vanilla Nexus format

Options

-t, --treef=FILE
              input tree file, STDIN otherwise

       -o, --outf=FILE
              output tree file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

Reporting Bugs

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>