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pxtscale - tree rescaling by factor or root height

Author

       Written by Joseph W. Brown

Citation

       Brown, Joseph W., Joseph F. Walker, and Stephen A.  Smith.  2017.  Phyx:  phylogenetic  tools  for  unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Description

       Tree  rescaling  by  providing  either  scaling  factor  or  root  height.   This  will take a newick- or
       nexus-formatted tree from a file or STDIN.  Output is written in newick format.

Name

       pxtscale - tree rescaling by factor or root height

Options

-t, --treef=FILE
              input tree file, STDIN otherwise

       -s, --scale=DOUBLE
              edge length scaling factor

       -r, --rootheight=DOUBLE height of root (tree must be ultrametric)

       -o, --outf=FILE
              output file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

Reporting Bugs

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>

Synopsis

pxtscale [OPTIONS]...

See Also