sga-aligm - align reads to contigs

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

sga-align 0.10.15                                September 2016                                     SGA-ALIGN(1)

       The  major  goal  of  SGA  is  to  be  very  memory  efficient,  which  is achieved by using a compressed
       representation of DNA sequence reads.

       SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of
       assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find  overlaps  between  sequence
       reads.

       sga-aligm - align reads to contigs

       --name=STR
              Use STR as the basename for the output files.

       -t,--threads=N
              Use N threads when running bwa.

sga-align[options]<contigsfile><inputfiles>