sim2gff - Converts SIM file into GFF formatted records

       sim2gff was written by Thomas Wiehe <twiehe@imb-jena.de>.

       This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may
       be used by others).

                                         Mon, 21 Mar 2005 21:44:15 -0300                              SIM2GFF(1)

       This manual page documents briefly the sim2gff command.

       sim2gff  is  a  program  written  in Perl that converts SIM file into GFF formatted records (for use with
       gff2aplot and gff2javaplot).

       The following perl-like exit status are returned:

       0 Error

       1 Successful completion

       sim2gff - Converts SIM file into GFF formatted records

-h,--help
              Show summary of options.

       -f     Output is written to a file named <sim_file>.gff.

       -r     Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis).

       -x<name>
              Specify the species name for species1 (default: "Seq1").

       -y<name>
              Specify the species name for species2 (default: "Seq2").

       -H     Use the fasta file headers for species labels.

ali2gff(1), blat2gff(1), gff2aplot(1), parseblast(1).

sim2gff [-frxyHh] sim_file > gff_file