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stream_pixels - Stream pixel data from one or more images to Standard Output.

Acknowledgments

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium  on  Alcohol  and
       Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.

CMTK 3.3.1p2                                       Feb 26 2025                                  stream_pixels(1)

Authors

       Torsten  Rohlfing,  with  contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B.
       Russakoff, and Yaroslav Halchenko

Bugs

Description

       This  tool  reads  one  or  more  images  and  writes all their pixels to standard output in binary form.
       Optionally, each image can be reoriented to a specified anatomical  orientation  and/or  converted  to  a
       different  data  type.  This  is  useful  for  piping image data through a pipeline, e.g., the Camino DTI
       toolkit.

License

Name

       stream_pixels - Stream pixel data from one or more images to Standard Output.

Options

GlobalToolkitOptions(thesearesharedbyallCMTKtools)--help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level<integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads<integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   MainOptions--reorient<string>
            Reorient all images to anatomy-based standard orientation, e.g., RAS or LPS for axial.  Default:  no
            reorientation.  [Default:NONE]--change-endian
            Change endianness. Default: native endianness.

       --convert
            Convert data to new scalar type. Default: no conversion.  Supported values: "char", "byte", "short",
            "ushort", "int", "uint", "float", "double", or use one of the following:

            --char
                 8 bits, signed integer

            --byte
                 8 bits, unsigned integer

            --short
                 16 bits, signed integer

            --ushort
                 16 bits, unsigned integer

            --int
                 32 bits, signed integer

            --uint
                 32 bits, unsigned integer

            --float
                 32-bits, single-precision floating point

            --double
                 64 bits, double-precision floating point

Synopsis

stream_pixels ImagePaths

See Also