textsearch - Search the textual description of sequence(s)
Contents
Bugs
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
Copyright
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
redistributed under the same terms as EMBOSS itself.
EMBOSS 6.4.0 05/11/2012 TEXTSEARCH(1e)
Description
textsearch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
It is part of the "Data retrieval:Text data" command group(s).
Name
textsearch - Search the textual description of sequence(s)
Options
Inputsection-sequenceseqallRequiredsection-patternstring
The search pattern is a regular expression. Use a | to indicate OR. For example: human|mouse will
find text with either 'human' OR 'mouse' in the text
Additionalsection-casesensitiveboolean
Default value: N
Outputsection-htmlboolean
Default value: N
-onlyboolean
This is a way of shortening the command line if you only want a few things to be displayed. Instead
of specifying: '-nohead -noname -nousa -noacc -nodesc' to get only the name output, you can specify
'-only -name' Default value: N
-headingboolean
Default value: @(!$(only))
-usaboolean
Default value: @(!$(only))
-accessionboolean
Default value: @(!$(only))
-nameboolean
Default value: @(!$(only))
-descriptionboolean
Default value: @(!$(only))
-outfileoutfileSee Also
textsearch is fully documented via the tfm(1) system.
Synopsis
textsearch-sequenceseqall-patternstring [-casesensitiveboolean] [-htmlboolean] -onlyboolean-headingboolean-usaboolean-accessionboolean-nameboolean-descriptionboolean-outfileoutfiletextsearch-help
