tradis_comparison - bio-tradis: compares two experimental conditions using the method of Dembek et al.

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

tradis_comparison 1.3.1                            March 2017                               TRADIS_COMPARISON(1)

       Compares two experimental conditions using the method of Dembek et al.  mBio 2015. Read counts  per  gene
       are compared using edgeR. This analysis requires experimental replicates.

       tradis_comparison - bio-tradis: compares two experimental conditions using the method of Dembek et al.

RequiredArguments:--controls
              control libraries, generally growth in a permissive condition

       --conditions
              libraries exposed to the experimental condition being compared

   OptionalArguments:-o     output filename

       -p     output filename for diagnostic plots

       -f     enable filtering on minimum read counts

       -t     if  --filter  is  enabled,  sets  minimum  read  count necessary in one condition for a gene to be
              included in the comparison.

tradis_comparison  [-h]  [-f]  [-treadcutoff]  [-ooutputfile.csv]  [-poutputplot.pdf]  --controlscontrols.txt--conditionsconditions.txt