trees-distances - Compute autocorrelations or other functions of tree distances.

–analysisarg (=matrix)
              Analysis: matrix, autocorrelation, diameter, compare, convergence, converged.

       –metricarg (=topology)
              Tree distance: topology, branch, internal-branch.

       –remove-duplicates
              [matrix]: disallow zero distances between points.

       –max-lagarg
              [autocorrelation]: max lag to consider.

       –CIarg (=0.95)
              Confidence interval size.

       –convergedarg (=0.05)
              Comma-separated quantiles of distance required for converged?  (smaller is more strict).

       –mean  Show mean and standard deviation

       –median
              Show median and confidence interval

       –minmax
              Show minimum and maximum distances

       –leaves-only
              Show minimum and maximum distances

       –topology-only
              Show minimum and maximum distances

       –jitterarg
              Amount of noise to add to distances

       Benjamin Redelings.

                                                    Feb 2018                                  trees-distances(1)

       Compute autocorrelations or other functions of tree distances.

-h, –help
              produce help message

       -sarg (=0), –skiparg (=0)
              number of tree samples to skip

       -uarg, –untilarg
              Read until this number of trees.

       -marg, –maxarg
              Thin tree samples down to this number of trees.

       -xarg (=1), –subsamplearg (=1)
              factor by which to subsample

       -V, –verbose
              Output more log messages on stderr.

trees-distances - Compute autocorrelations or other functions of tree distances.

       BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

       Please send bug reports to <bali-phy-users@googlegroups.com>.

trees-distancesanalysis trees-file1 [trees-file2 ...]