umis - tools for processing UMI RNA-tag data

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

umis 1.0.3                                         April 2019                                            UMIS(1)

       umis - tools for processing UMI RNA-tag data

--help Show this message and exit.

   Commands:
       add_uid
              Adds UID:[samplebc cellbc umi] to readname for...

       bamtag Convert a BAM/SAM with fastqtransformed read names to...

       cb_filter
              Filters reads with non-matching barcodes Expects...

       cb_histogram
              Counts the number of reads for each cellular barcode...

       demultiplex_cells
              Demultiplex a fastqtransformed FASTQ file into a...

       demultiplex_samples
              Demultiplex a fastqtransformed FASTQ file into a...

       fastqtransform
              Transform input reads to the tagcounts compatible...

       fasttagcount
              Count up evidence for tagged molecules, this...

       kallisto
              Convert fastqtransformed file to output format...

       mb_filter
              Filters umis with non-ACGT bases Expects formatted...

       sb_filter
              Filters reads with non-matching sample barcodes...

       sparse Convert a CSV file to a sparse matrix with rows and...

       subset_bamfile
              Subset a SAM/BAM file, keeping only alignments from...

       tagcount
              Count up evidence for tagged molecules

       umi_histogram
              Counts the number of reads for each UMI Expects...

              version

umis [OPTIONS] COMMAND [ARGS]...