vcf2fasta

       Erik Garrison and vcflib contributors.

vcf2fasta (vcflib)                                                                                  VCF2FASTA(1)

       Generates  sample_seq:N.fa  for  each  sample,  reference  sequence,  and  chromosomal  copy N in [0,1...
       ploidy].  Each sequence in the fasta file is named using the same pattern used for the file name,  allow‐
       ing them to be combined.

0      Success

       not0  Failure

       Copyright  2011-2024  (C)  Erik Garrison and vcflib contributors.  MIT licensed.  Copyright 2020-2024 (C)
       Pjotr Prins.

vcf2fasta

              options:
                  -f, --reference REF     Use this reference when decomposing samples.
                  -p, --prefix PREFIX     Affix this output prefix to each file, none by default
                  -P, --default-ploidy N  Set a default ploidy for samples which do not have
                                          information in the first record (2).
                  -n VAL                  Set string value to output for missing calls

              Type: transformation

vcflib(1)

vcf2fasta options [file]