vcfflatten

       Erik Garrison and vcflib contributors.

vcfflatten (vcflib)                                                                                VCFFLATTEN(1)

       Removes  multi-allelic  sites by picking the most common alternate.  Requires allele frequency specifica‐
       tion `AF' and use of `G' and `A' to specify the fields which vary according to the  Allele  or  Genotype.
       VCF file may be specified on the command line or piped as stdin.

0      Success

       not0  Failure

       Copyright  2011-2024  (C)  Erik Garrison and vcflib contributors.  MIT licensed.  Copyright 2020-2024 (C)
       Pjotr Prins.

vcfflatten

              Type: transformation

vcflib(1)

vcfflatten [options][file] -h –help display this help message and exit.  -i –ignore-errors do not flatten
       locus if `AF' is not specified.