vcfstats

       Erik Garrison and vcflib contributors.

vcfstats (vcflib)                                                                                    VCFSTATS(1)

       Prints statistics about variants in the input VCF file.

0      Success

       not0  Failure

       Copyright  2011-2024  (C)  Erik Garrison and vcflib contributors.  MIT licensed.  Copyright 2020-2024 (C)
       Pjotr Prins.

vcfstats

                  -r, --region          specify a region on which to target the stats, requires a BGZF
                                        compressed file which has been indexed with tabix.  any number of
                                        regions may be specified.
                  -a, --add-info        add the statistics intermediate information to the VCF file,
                                        writing out VCF records instead of summary statistics
                  -t, --add-type        only add the type= field to the info (faster than -a)
                  -l, --no-length-frequency    don't out the indel and mnp length-frequency spectra
                  -m, --match-score N          match score for SW algorithm
                  -x, --mismatch-score N       mismatch score for SW algorithm
                  -o, --gap-open-penalty N     gap open penalty for SW algorithm
                  -e, --gap-extend-penalty N   gap extension penalty for SW algorithm

              Type: statistics

vcflib(1)

vcfstats options