VFDBgenus - Extract virulence genes by genus from the VFDB database
Contents
Description
This tool is part of the SRST2 suite.
Extract virulence genes by genus from the VFDB database available at
http://www.mgc.ac.cn/VFs/Down/CP_VFs.ffn.gzName
VFDBgenus - Extract virulence genes by genus from the VFDB database
Options
optionalarguments:-h, --help
show this help message and exit
--infile INFILE
Raw VFDB sequences file (fasta, e.g. download from http://www.mgc.ac.cn/VFs/Down/CP_VFs.ffn.gz)
--genus GENUS
Genus to extract (if not specified, all genera will be extracted to individual files)
Synopsis
VFDBgenus [-h] --infile INFILE [--genus GENUS]
