volume_injection - Volume injection

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium  on  Alcohol  and
       Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.

CMTK 3.3.1p2                                       Feb 26 2025                               volume_injection(1)

       Torsten  Rohlfing,  with  contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B.
       Russakoff, and Yaroslav Halchenko

       Report bugs at http://nitrc.org/projects/cmtk/

       Reconstruction a high-resolution volume from multiple co-registered (low-resolution) images using forward
       volume injection

http://www.fsf.org/licensing/licenses/gpl.html

       volume_injection - Volume injection

GlobalToolkitOptions(thesearesharedbyallCMTKtools)--help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level<integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads<integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   InputOptions--exclude-first-image, -x
            Exclude first image from reconstruction as a separate registration target image)

       --pass-weight<string>, -W<string>
            Set contribution weight for a pass in the form 'pass:weight'

   ReconstructionGridOptions--recon-grid<string>
            Define reconstruction grid as Nx,Ny,Nz:dX,dY,dZ[:Ox,Oy,Oz] (dims:pixel:offset)

       --recon-grid-path<string>, -R<string>
            Give path to grid that defines reconstructed image grid [including offset] [Default:NONE]--crop<string>
            Crop reference to pixel region x0,y0,z1:x1,y1,z1

   VolumeInjectionOptions--isotropic-injection
            Use isotropic volume injection [default: scaled with pass image pixel size per dimension]

       --injection-kernel-sigma<double>, -S<double>
            Gauss contribution [Default:1]--injection-kernel-radius<integer>, -r<integer>
            VolumeInjectionRadius of affected pixel [Default:0]OutputOptions--output<string>, -o<string>
            Output image path [Default:volume_injection.nii]--write-images-as-float, -F
            Write output images as floating point [default: same as input]

       volume_injection [options] refImage xform0 inImage0 [xform1 inImage1 ...]