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xplor2gmx - Convert XPLOR distance restraints to Gromacs format

Description

xplor2gmx  reads  an  XPLOR  input  file  with  distance  restraint data as sometimes is found in the pdb
       database (http://www.pdb.org).  From this input file dihedral restrints should be removed, such that only
       distance restraints are left. The script can handle  ambiguous  restraints.   It  converts  the  distance
       restraints to GROMACS format.

       A  restraints  file  (.dat)  should  be  provided  on STDIN, and a suitable output file (.itp) is sent to
       STDOUT.

Examples

       xplor2gmx.pl 33 conf.pdb < restraints.dat > disre.itp

Name

       xplor2gmx - Convert XPLOR distance restraints to Gromacs format

Options

xplor2gmx requires two command line options: first,  the  residue  offset  (integer);  second,  the  .pdb
       filename.  The pdb file must have correct atom numbers.

See Also

gromacs(7)

GROMACS suite, Version 4.0                         13 Oct 2008                                      xplor2gmx(1)

Synopsis

xplor2gmx(residueoffset)input.pdb

See Also