xplor2gmx - Convert XPLOR distance restraints to Gromacs format
Contents
Description
xplor2gmx reads an XPLOR input file with distance restraint data as sometimes is found in the pdb
database (http://www.pdb.org). From this input file dihedral restrints should be removed, such that only
distance restraints are left. The script can handle ambiguous restraints. It converts the distance
restraints to GROMACS format.
A restraints file (.dat) should be provided on STDIN, and a suitable output file (.itp) is sent to
STDOUT.
Examples
xplor2gmx.pl 33 conf.pdb < restraints.dat > disre.itp
Name
xplor2gmx - Convert XPLOR distance restraints to Gromacs format
Options
xplor2gmx requires two command line options: first, the residue offset (integer); second, the .pdb
filename. The pdb file must have correct atom numbers.
See Also
gromacs(7) GROMACS suite, Version 4.0 13 Oct 2008 xplor2gmx(1)
Synopsis
xplor2gmx(residueoffset)input.pdb
