alignment-chop-internal - Remove ancestral sequences from an alignment.

-h, –help
              produce help message

       –alignarg
              file with sequences and initial alignment

       –alphabetarg
              set to `Codons' to prefer codon alphabets

       –treearg
              file with tree that specifies leaves to keep

       -Narg, –nleavesarg
              number of sequences to keep

       Benjamin Redelings.

                                                    Feb 2018                          alignment-chop-internal(1)

       Remove ancestral sequences from an alignment.

alignment-chop-internal - Remove ancestral sequences from an alignment.

       BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

       Please send bug reports to <bali-phy-users@googlegroups.com>.

alignment-chop-internal [OPTIONS] < alignments-file